更新时间：2024-05-14 GMT+08:00
查询作业
功能描述
查询指定job详情。
命令结构
health nextflow get job ID [flags]
参数 |
简写 |
是否必选 |
说明 |
|---|---|---|---|
ID |
不涉及 |
否 |
job id，不指定job-id时，列出当前project的全部job的基本信息。 |
--type |
-t |
否 |
查询类型，默认detail。此参数用于获取作业列表。 取值：logs、detail、reports 。
|
--sortDir |
-d |
否 |
排序规则，按创建时间排序，默认DESC。此参数用于获取作业列表。 取值：DESC、ASC。 |
--sortKey |
-y |
否 |
指定需要排序的key，如：create_time。此参数用于获取作业列表。 取值：create_time,finish_time,name,status,user_name,workflow_name |
--limit |
-l |
否 |
代表当次请求获取的最大条数。此参数用于获取作业列表。 默认值：100。 |
--offset |
-o |
否 |
代表从哪个位置开始。默认为0。此参数用于获取作业列表。 |
--jobName |
-j |
否 |
作业名。此参数用于获取作业列表。 |
--labels |
-a |
否 |
按标签筛选列表，标签间用, 分隔。例子：label1,label2。此参数用于获取作业列表。 |
--status |
-s |
否 |
作业状态。此参数用于获取作业列表。 取值：CANCELLED，COMPLETED，FAILED，RUNNING，SUBMITTED，UNKNOWN |
--workflowName |
-w |
否 |
流程名。此参数用于获取作业列表。 |
--userName |
-u |
否 |
用户名。此参数用于获取作业列表。 |
--createStartTime |
-c |
否 |
最小创建时间，格式：YYYY-MM-DD HH:MM:SS。例子："2006-01-02 15:04:05"。此参数用于获取作业列表。 |
--createEndTime |
-e |
否 |
最大创建时间，格式：YYYY-MM-DD HH:MM:SS。例子："2006-01-02 15:04:05"。此参数用于获取作业列表。 |
--finishStartTime |
-f |
否 |
最小完成时间，格式：YYYY-MM-DD HH:MM:SS。例子："2006-01-02 15:04:05"。此参数用于获取作业列表。 |
--finishEndTime |
-m |
否 |
最大完成时间，格式：YYYY-MM-DD HH:MM:SS。例子："2006-01-02 15:04:05"。此参数用于获取作业列表。 |
命令示例
- 获取作业列表
health nextflow get job --limit 2 --offset 0 --sortDir DESC --sortKey create_time --jobName j1 --labels "a" --status "SUBMITTED" --workflowName "h5" --userName "ei_eihealth_01" --createStartTime "2023-03-07 07:47:54" { "jobs": [ { "id": "a37c22fc-0c8f-4ca2-a354-97f997a5ab96", "name": "j1", "description": "htest", "labels": [ "a", "b", "c" ], "status": "SUBMITTED", "has_ignore_failed_tasks": false, "create_time": "2023-03-07T07:47:54Z", "failed_message": "", "failed_reason": "", "user_name": "ei_eihealth_01", "workflow_name": "h5", "workflow_id": "113b2ee6-bcb3-11ed-b7f6-fa163e504fdd" } ], "count": 4 } - 按创建时间由小到大获取作业列表
health nextflow get job --sortKey "create_time" --sortDir ASC { "jobs": [ { "id": "a37c22fc-0c8f-4ca2-a354-97f99xxx", "name": "j1", "description": "htest", "labels": [ "a", "b", "c" ], "status": "SUBMITTED", "has_ignore_failed_tasks": false, "create_time": "2023-03-07T07:47:54Z", "failed_message": "", "failed_reason": "", "user_name": "ei_eihealth_01", "workflow_name": "h5", "workflow_id": "113b2ee6-bcb3-11ed-b7f6-fa1xxx" }, { "id": "020cf2a1-36ca-4c2e-9be6-aa070325f2e5", "name": "j1", "description": "htest", "labels": [ "d" ], "status": "SUBMITTED", "has_ignore_failed_tasks": false, "create_time": "2023-03-07T09:44:44Z", "failed_message": "", "failed_reason": "", "user_name": "ei_eihealth_01", "workflow_name": "h5", "workflow_id": "113b2ee6-bcb3-11ed-b7f6-fa163xxx" } ], "count": 4 } - 获取作业日志
# 获取作业日志 health nextflow get job "a37c22fc-0c8f-4ca2-a354-97f997a5ab96" -t logs { "count": 14, "logs": [ "Mar-07 15:48:04.575 [main] DEBUG nextflow.cli.Launcher - $> nextflow -log ./e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c/nextflow.log run ./e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c/h5/m.nf -name q07ae83e-b12c-4137-b417-0fa3ac61094c -w /nextflow/__nextflow_work__/e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c -c ./e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c/nextflow.config -params-file ./e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c/params.json -with-trace -with-report -with-timeline -with-dag -with-weblog 'http://127.0.0.1:8445/v1.0/nextflow/web-log'", "Mar-07 15:48:05.285 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 22.10.6", "Mar-07 15:48:05.309 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/service/.nextflow/plugins; core-plugins: nf-amazon@1.11.3,nf-azure@0.14.2,nf-codecommit@0.1.2,nf-console@1.0.4,nf-ga4gh@1.0.4,nf-google@1.4.5,nf-tower@1.5.6,nf-wave@0.5.3", "Mar-07 15:48:05.390 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: []", "Mar-07 15:48:05.415 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: []", "Mar-07 15:48:05.420 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode", "Mar-07 15:48:05.718 [main] INFO org.pf4j.AbstractPluginManager - No plugins", "Mar-07 15:48:05.869 [main] DEBUG nextflow.scm.ProviderConfig - Using SCM config path: /home/service/.nextflow/scm", "Mar-07 15:48:05.880 [main] DEBUG nextflow.cli.Launcher - Operation aborted", "nextflow.exception.AbortOperationException: Cannot find script file: ./e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c/h5/m.nf", "\tat nextflow.cli.CmdRun.getScriptFile(CmdRun.groovy:448)", "\tat nextflow.cli.CmdRun.run(CmdRun.groovy:300)", "\tat nextflow.cli.Launcher.run(Launcher.groovy:487)", "\tat nextflow.cli.Launcher.main(Launcher.groovy:646)" ], "download_url": "https://xxx/__nextflow_run__/e6dcd289-dadb-48d9-b53b-e0c6c256932e/q07ae83e-b12c-4137-b417-0fa3ac61094c/nextflow.log?AccessKeyId=VQ52M3Q7I4WPWPDUB5XZ&Expires=1678190993&Signature=oRiADod2TExnsP56Q9k%2FSgm4h9g%3D" } - 获取作业详情
# 获取作业详情 health nextflow get job "a37c22fc-0c8f-4ca2-a354-97f997a5ab96" { "id": "a37c22fc-0c8f-4ca2-a354-97f997axxx", "name": "j1", "description": "htest", "labels": [ "a", "b", "c" ], "status": "SUBMITTED", "has_ignore_failed_tasks": false, "create_time": "2023-03-07T07:47:54Z", "failed_message": "", "failed_reason": "", "workflow_name": "h5", "workflow_id": "113b2ee6-bcb3-11ed-b7f6-fa163e5xxx", "command_line": "nextflow run m.nf", "params": [], "config_context": "" }
父主题： Nextflow作业管理命令
